PDB ligand accession: NAG
DrugBank: DB00141
PubChem:
ChEMBL:
InChI Key: OVRNDRQMDRJTHS-FMDGEEDCSA-N
SMILES: CC(=O)NC1C(C(C(OC1O)CO)O)O
Drug action: n/a
ClassyFire chemical classification:
- Kingdom: Organic compounds
- Superclass: Organic oxygen compounds
- Class: Organooxygen compounds
- Subclass: Carbohydrates and carbohydrate conjugates
- Class: Organooxygen compounds
- Superclass: Organic oxygen compounds
| PDB/AF Accession | PyMOL script | Experimental / Predicted | Interacting ECOD domains | ECOD X-group name | LigPlot |
|---|---|---|---|---|---|
| 6OPN | Download | Experimental | e6opnA1 e6opnD2 e6opnG2 e6opnA2 e6opnA1 e6opnA2 e6opnD1 e6opnD1 e6opnD2 e6opnG1 e6opnG1 e6opnG2 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 5VN8 | Download | Experimental | e5vn8G3 e5vn8D3 e5vn8E3 e5vn8G2 e5vn8G1 e5vn8D2 e5vn8D1 e5vn8E1 e5vn8E2 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like V1/V2 domain in HIV gp120 gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain | LigPlot |
| 6U59 | Download | Experimental | e6u59A1 e6u59C1 e6u59G3 e6u59A3 e6u59A2 e6u59A1 e6u59A2 e6u59C2 e6u59C3 e6u59C1 e6u59C3 e6u59G1 e6u59G2 e6u59G2 e6u59G3 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 6MUF | Download | Experimental | e6mufG2 e6mufG3 e6mufG1 e6mufG3 | gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 Ribosomal protein L31e-like | LigPlot |
| 6OPP | Download | Experimental | e6oppA1 e6oppD3 e6oppJ1 e6oppA2 e6oppA1 e6oppA2 e6oppD2 e6oppD2 e6oppD3 e6oppJ2 e6oppJ1 e6oppJ2 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain gp120 inner domain Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain | LigPlot |
| 6CH9 | Download | Experimental | e6ch9G2 e6ch9G3 e6ch9G1 e6ch9G1 e6ch9G2 | Ribosomal protein L31e-like V1/V2 domain in HIV gp120 gp120 inner domain gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 6OPQ | Download | Experimental | e6opqA1 e6opqD1 e6opqE2 e6opqA2 e6opqA1 e6opqA2 e6opqD2 e6opqD1 e6opqD2 e6opqE1 e6opqE1 e6opqE2 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 6OPO | Download | Experimental | e6opoA1 e6opoD1 e6opoJ2 e6opoA2 e6opoA1 e6opoA2 e6opoD2 e6opoD1 e6opoD2 e6opoJ1 e6opoJ1 e6opoJ2 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 6MUG | Download | Experimental | e6mugG1 e6mugG3 e6mugG2 e6mugG1 | Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 Ribosomal protein L31e-like | LigPlot |
| 6MCO | Download | Experimental | e6mcoG3 e6mcoG1 e6mcoG2 e6mcoG2 e6mcoG3 | Ribosomal protein L31e-like V1/V2 domain in HIV gp120 gp120 inner domain gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 5VN3 | Download | Experimental | e5vn3G3 e5vn3I2 e5vn3J2 e5vn3G2 e5vn3G2 e5vn3G3 e5vn3G3 e5vn3C2 e5vn3I3 e5vn3I2 e5vn3I3 e5vn3I2 e5vn3E1 e5vn3J1 e5vn3J1 e5vn3J2 e5vn3J2 e5vn3F2 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain gp120 inner domain Ribosomal protein L31e-like Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich gp120 inner domain Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich gp120 inner domain gp120 inner domain Ribosomal protein L31e-like Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich | LigPlot |
| 6MDT | Download | Experimental | e6mdtB1 | MPER trimer | LigPlot |
| 6EDU | Download | Experimental | e6eduD2 e6eduD3 e6eduE1 e6eduE3 e6eduF1 e6eduF2 e6eduD3 e6eduD1 e6eduE3 e6eduE2 e6eduE3 e6eduF1 e6eduF3 | Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain gp120 inner domain V1/V2 domain in HIV gp120 | LigPlot |
| 6X5B | Download | Experimental | e6x5bA1 e6x5bA2 e6x5bD1 e6x5bD2 e6x5bJ1 e6x5bJ2 e6x5bA2 e6x5bD2 e6x5bJ2 | Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain gp120 inner domain gp120 inner domain | LigPlot |
| 6X5C | Download | Experimental | e6x5cA1 e6x5cA2 e6x5cD2 e6x5cE1 e6x5cD1 e6x5cD2 e6x5cE2 e6x5cE1 e6x5cE2 | gp120 inner domain Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain | LigPlot |
| 6OKP | Download | Experimental | e6okpD2 e6okpE3 e6okpD2 e6okpF2 e6okpD3 e6okpM1 e6okpD3 e6okpD1 e6okpE1 e6okpE2 e6okpK1 e6okpE1 e6okpE2 e6okpF1 e6okpF3 e6okpF2 e6okpE1 e6okpE2 e6okpO1 e6okpF1 e6okpQ1 | V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich Ribosomal protein L31e-like gp120 inner domain gp120 inner domain Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich gp120 inner domain Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich | LigPlot |