PDB ligand accession: DG3
DrugBank: n/a
PubChem: 446577;5288049;135430795;
ChEMBL:
InChI Key: HDRRAMINWIWTNU-NTSWFWBYSA-N
SMILES: c1nc2c(n1C3CCC(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N=C(NC2=O)N
Drug action: n/a
ClassyFire chemical classification:
- Kingdom: Organic compounds
- Superclass: Nucleosides, nucleotides, and analogues
- Class: Purine nucleotides
- Subclass: Purine deoxyribonucleotides
- Class: Purine nucleotides
- Superclass: Nucleosides, nucleotides, and analogues
PDB/AF Accession | PyMOL script | Experimental / Predicted | Interacting ECOD domains | ECOD X-group name | LigPlot |
---|---|---|---|---|---|
8E23 | Download | Experimental | e8e23A2 e8e23A3 e8e23A4 e8e23D1 e8e23D2 e8e23D3 | Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits | LigPlot |
7ZX0 | Download | Experimental | e7zx0AAA1 e7zx0AAA3 e7zx0AAA4 e7zx0BBB1 e7zx0BBB2 e7zx0BBB3 e7zx0CCC2 e7zx0CCC3 e7zx0CCC4 e7zx0DDD2 e7zx0DDD3 e7zx0DDD4 e7zx0EEE1 e7zx0EEE2 e7zx0EEE3 e7zx0FFF1 e7zx0FFF2 e7zx0FFF4 | Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
7ZX1 | Download | Experimental | e7zx1AAA2 e7zx1AAA3 e7zx1AAA4 e7zx1BBB1 e7zx1BBB2 e7zx1BBB3 e7zx1DDD1 e7zx1DDD3 e7zx1DDD4 e7zx1EEE2 e7zx1EEE3 e7zx1EEE4 e7zx1FFF1 e7zx1FFF2 e7zx1FFF3 e7zx1CCC1 e7zx1CCC2 e7zx1CCC3 | Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |
4X0Q | Download | Experimental | e4x0qA1 e4x0qA2 e4x0qA3 e4x0qB1 e4x0qB2 e4x0qB3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
8E24 | Download | Experimental | e8e24A2 e8e24A3 e8e24A4 e8e24D1 e8e24D2 e8e24D4 | Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
7ZUS | Download | Experimental | e7zusAAA1 e7zusAAA2 e7zusAAA4 e7zusBBB1 e7zusBBB2 e7zusBBB4 e7zusCCC1 e7zusCCC2 e7zusCCC3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
6XBU | Download | Experimental | e6xbuA2 e6xbuA3 | Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |