PDB ligand accession: NDP
DrugBank: DB02338
PubChem: 5884;134821689;
ChEMBL:
InChI Key: ACFIXJIJDZMPPO-NNYOXOHSSA-N
SMILES: c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
Drug action: n/a
ClassyFire chemical classification:
- Kingdom: Organic compounds
- Superclass: Nucleosides, nucleotides, and analogues
- Class: (5'->5')-dinucleotides
- Subclass: None
- Class: (5'->5')-dinucleotides
- Superclass: Nucleosides, nucleotides, and analogues
| PDB/AF Accession | PyMOL script | Experimental / Predicted | Interacting ECOD domains | ECOD X-group name | LigPlot |
|---|---|---|---|---|---|
| 7CAT | Download | Experimental | e7catA1 e7catA2 e7catA3 e7catB1 e7catB2 e7catB3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 3NWL | Download | Experimental | e3nwlA1 e3nwlA2 e3nwlA3 e3nwlB1 e3nwlB2 e3nwlB3 e3nwlC1 e3nwlC2 e3nwlC3 e3nwlD1 e3nwlD2 e3nwlD3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 7DI8 | Download | Experimental | e7di8A1 e7di8A2 e7di8A3 e7di8B1 e7di8B2 e7di8B3 e7di8C1 e7di8C2 e7di8C3 e7di8D1 e7di8D2 e7di8D3 | Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases | LigPlot |
| 6JNT | Download | Experimental | e6jntA1 e6jntA2 e6jntA3 e6jntB1 e6jntB2 e6jntB3 e6jntC1 e6jntC2 e6jntC3 e6jntD1 e6jntD2 e6jntD3 | Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 6JNU | Download | Experimental | e6jnuA1 e6jnuA2 e6jnuA3 e6jnuB1 e6jnuB2 e6jnuB3 e6jnuC1 e6jnuC2 e6jnuC3 e6jnuD1 e6jnuD2 e6jnuD3 | First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases | LigPlot |
| 8CAT | Download | Experimental | e8catA1 e8catA2 e8catA3 e8catB1 e8catB2 e8catB3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 3J7B | Download | Experimental | e3j7bA1 e3j7bA2 e3j7bA3 e3j7bB1 e3j7bB2 e3j7bB3 e3j7bC1 e3j7bC2 e3j7bC3 e3j7bD1 e3j7bD2 e3j7bD3 | First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 6PO0 | Download | Experimental | e6po0A1 e6po0A2 e6po0A3 e6po0B1 e6po0B2 e6po0B3 e6po0C1 e6po0C2 e6po0C3 e6po0D1 e6po0D2 e6po0D3 | Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases | LigPlot |
| 5GKN | Download | Experimental | e5gknA1 e5gknA2 e5gknA3 e5gknB1 e5gknB2 e5gknB3 e5gknC1 e5gknC2 e5gknC3 e5gknD1 e5gknD2 e5gknD3 | First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases | LigPlot |
| 6PM7 | Download | Experimental | e6pm7A1 e6pm7A2 e6pm7A3 e6pm7B1 e6pm7B2 e6pm7B3 | Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 4BLC | Download | Experimental | e4blcA1 e4blcA2 e4blcA3 e4blcB1 e4blcB2 e4blcB3 e4blcC1 e4blcC2 e4blcC3 e4blcD1 e4blcD2 e4blcD3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |