Ligand name: GUANOSINE-5'-DIPHOSPHATE
PDB ligand accession: GDP
DrugBank: DB04315
PubChem: 8977;5280316;135398619;
ChEMBL: CHEMBL384759
InChI Key: QGWNDRXFNXRZMB-UUOKFMHZSA-N
SMILES: c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
Drug action: n/a

ClassyFire chemical classification:

• Kingdom: Organic compounds
  • Superclass: Nucleosides, nucleotides, and analogues
    • Class: Purine nucleotides
      • Subclass: Purine ribonucleotides

List of PDB structures and/or AlphaFold models with target protein P01116

PDB/AF Accession	PyMOL script	Experimental / Predicted	Interacting ECOD domains	ECOD X-group name	LigPlot
8AFB	Download	Experimental	e8afbA1	P-loop domains-like	LigPlot
7MDP	Download	Experimental	e7mdpA1	P-loop domains-like	LigPlot
4LYF	Download	Experimental	e4lyfA1 e4lyfB1 e4lyfC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
8TXH	Download	Experimental	e8txhA1 e8txhB1	P-loop domains-like P-loop domains-like	LigPlot
6ARK	Download	Experimental	e6arkA1	P-loop domains-like	LigPlot
7F0W	Download	Experimental	e7f0wA1	P-loop domains-like	LigPlot
6P8X	Download	Experimental	e6p8xA1 e6p8xB1 e6p8xC1 e6p8xD1 e6p8xD1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
6W4F	Download	Experimental	e6w4fB1 e6w4fC1	P-loop domains-like P-loop domains-like	LigPlot
5WHA	Download	Experimental	e5whaA1 e5whaD1 e5whaG1 e5whaJ1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
7EYX	Download	Experimental	e7eyxA1	P-loop domains-like	LigPlot
8TXE	Download	Experimental	e8txeA1 e8txeB1	P-loop domains-like P-loop domains-like	LigPlot
8STN	Download	Experimental	e8stnA1 e8stnB1	P-loop domains-like P-loop domains-like	LigPlot
6YXW	Download	Experimental	e6yxwA1 e6yxwC1	P-loop domains-like P-loop domains-like	LigPlot
6USZ	Download	Experimental	e6uszA1	P-loop domains-like	LigPlot
8G4F	Download	Experimental	e8g4fB1	P-loop domains-like	LigPlot
8FMJ	Download	Experimental	e8fmjA1	P-loop domains-like	LigPlot
7O70	Download	Experimental	e7o70A1 e7o70D1	P-loop domains-like P-loop domains-like	LigPlot
4M1O	Download	Experimental	e4m1oA1 e4m1oB1 e4m1oC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
5WHD	Download	Experimental	e5whdA1 e5whdB1 e5whdC1 e5whdD1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
6BOF	Download	Experimental	e6bofA1 e6bofB1	P-loop domains-like P-loop domains-like	LigPlot
8EZG	Download	Experimental	e8ezgA1	P-loop domains-like	LigPlot
4M1W	Download	Experimental	e4m1wA1 e4m1wB1 e4m1wC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
5V6V	Download	Experimental	e5v6vA1 e5v6vB1	P-loop domains-like P-loop domains-like	LigPlot
5V9L	Download	Experimental	e5v9lA1 e5v9lB1 e5v9lC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
8AZY	Download	Experimental	e8azyA1	P-loop domains-like	LigPlot
5V6S	Download	Experimental	e5v6sA1	P-loop domains-like	LigPlot
4DSU	Download	Experimental	e4dsuA1	P-loop domains-like	LigPlot
8EER	Download	Experimental	e8eerA1	P-loop domains-like	LigPlot
6WS2	Download	Experimental	e6ws2A1 e6ws2B1 e6ws2C1 e6ws2D1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
4PZY	Download	Experimental	e4pzyA1 e4pzyB1	P-loop domains-like P-loop domains-like	LigPlot
4M1Y	Download	Experimental	e4m1yA1 e4m1yB1 e4m1yC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
4EPY	Download	Experimental	e4epyA1	P-loop domains-like	LigPlot
5TB5	Download	Experimental	e5tb5A1 e5tb5C1	P-loop domains-like P-loop domains-like	LigPlot
7R0Q	Download	Experimental	e7r0qA1 e7r0qB1	P-loop domains-like P-loop domains-like	LigPlot
4M21	Download	Experimental	e4m21A1 e4m21B1 e4m21C1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
6B0Y	Download	Experimental	e6b0yA1 e6b0yB1	P-loop domains-like P-loop domains-like	LigPlot
5YXZ	Download	Experimental	e5yxzA1	P-loop domains-like	LigPlot
6USX	Download	Experimental	e6usxA1 e6usxB1 e6usxB1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
8DNK	Download	Experimental	e8dnkA1	P-loop domains-like	LigPlot
8AFD	Download	Experimental	e8afdA1 e8afdB1 e8afdC1 e8afdD1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
7EWB	Download	Experimental	e7ewbA1	P-loop domains-like	LigPlot
5F2E	Download	Experimental	e5f2eA1	P-loop domains-like	LigPlot
6MBU	Download	Experimental	e6mbuA1 e6mbuB1	P-loop domains-like P-loop domains-like	LigPlot
4EPR	Download	Experimental	e4eprA1	P-loop domains-like	LigPlot
6P8Z	Download	Experimental	e6p8zA1 e6p8zB1	P-loop domains-like P-loop domains-like	LigPlot
6N2K	Download	Experimental	e6n2kA1	P-loop domains-like	LigPlot
8AQ5	Download	Experimental	e8aq5A1	P-loop domains-like	LigPlot
4LYJ	Download	Experimental	e4lyjA1	P-loop domains-like	LigPlot
6WS4	Download	Experimental	e6ws4A1 e6ws4B1 e6ws4C1 e6ws4D1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
4TQ9	Download	Experimental	e4tq9A1 e4tq9B1	P-loop domains-like P-loop domains-like	LigPlot
6OIM	Download	Experimental	e6oimA1	P-loop domains-like	LigPlot
6B0V	Download	Experimental	e6b0vA1 e6b0vB1	P-loop domains-like P-loop domains-like	LigPlot
6T5V	Download	Experimental	e6t5vA1	P-loop domains-like	LigPlot
8AZV	Download	Experimental	e8azvA1	P-loop domains-like	LigPlot
5XCO	Download	Experimental	e5xcoA1	P-loop domains-like	LigPlot
7OO7	Download	Experimental	e7oo7A1 e7oo7D1	P-loop domains-like P-loop domains-like	LigPlot
8JJS	Download	Experimental	e8jjsA1	P-loop domains-like	LigPlot
4OBE	Download	Experimental	e4obeA1 e4obeB1	P-loop domains-like P-loop domains-like	LigPlot
5YY1	Download	Experimental	e5yy1A1	P-loop domains-like	LigPlot
7RP3	Download	Experimental	e7rp3A1	P-loop domains-like	LigPlot
6MS9	Download	Experimental	e6ms9C1 e6ms9B1 e6ms9C1 e6ms9A1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
5VQ1	Download	Experimental	e5vq1A1 e5vq1B1	P-loop domains-like P-loop domains-like	LigPlot
7ACQ	Download	Experimental	e7acqA1 e7acqB1 e7acqC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
8DNJ	Download	Experimental	e8dnjA1 e8dnjB1 e8dnjC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
2MSC	Download	Experimental	e2mscB1	P-loop domains-like	LigPlot
4LV6	Download	Experimental	e4lv6A1 e4lv6B1	P-loop domains-like P-loop domains-like	LigPlot
4M1T	Download	Experimental	e4m1tA1 e4m1tB1 e4m1tC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
4QL3	Download	Experimental	e4ql3A1	P-loop domains-like	LigPlot
7YCE	Download	Experimental	e7yceA1	P-loop domains-like	LigPlot
8EDY	Download	Experimental	e8edyA1	P-loop domains-like	LigPlot
4PZZ	Download	Experimental	e4pzzA1	P-loop domains-like	LigPlot
6M9W	Download	Experimental	e6m9wA1	P-loop domains-like	LigPlot
5V9O	Download	Experimental	e5v9oA1	P-loop domains-like	LigPlot
6P8Y	Download	Experimental	e6p8yA1 e6p8yB1	P-loop domains-like P-loop domains-like	LigPlot
6MBT	Download	Experimental	e6mbtA1 e6mbtB1	P-loop domains-like P-loop domains-like	LigPlot
7YUZ	Download	Experimental	e7yuzA1	P-loop domains-like	LigPlot
7RT5	Download	Experimental	e7rt5A1	P-loop domains-like	LigPlot
4L8G	Download	Experimental	e4l8gA1	P-loop domains-like	LigPlot
8CX5	Download	Experimental	e8cx5A1 e8cx5B1	P-loop domains-like P-loop domains-like	LigPlot
8AZX	Download	Experimental	e8azxA1	P-loop domains-like	LigPlot
6YR8	Download	Experimental	e6yr8A1	P-loop domains-like	LigPlot
8FMK	Download	Experimental	e8fmkA1	P-loop domains-like	LigPlot
5O2S	Download	Experimental	e5o2sA1 e5o2sC1 e5o2sE1 e5o2sG1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
5US4	Download	Experimental	e5us4A1 e5us4B1	P-loop domains-like P-loop domains-like	LigPlot
4TQA	Download	Experimental	e4tqaA1 e4tqaB1	P-loop domains-like P-loop domains-like	LigPlot
7KMR	Download	Experimental	e7kmrA1	P-loop domains-like	LigPlot
7RT1	Download	Experimental	e7rt1A1	P-loop domains-like	LigPlot
4EPV	Download	Experimental	e4epvA1	P-loop domains-like	LigPlot
5VQ0	Download	Experimental	e5vq0A1 e5vq0B1	P-loop domains-like P-loop domains-like	LigPlot
7A1Y	Download	Experimental	e7a1yA1	P-loop domains-like	LigPlot
5UQW	Download	Experimental	e5uqwA1 e5uqwB1	P-loop domains-like P-loop domains-like	LigPlot
7T47	Download	Experimental	e7t47A1	P-loop domains-like	LigPlot
6PGO	Download	Experimental	e6pgoA1 e6pgoB1	P-loop domains-like P-loop domains-like	LigPlot
8G42	Download	Experimental	e8g42B1	P-loop domains-like	LigPlot
6TAN	Download	Experimental	e6tanA1	P-loop domains-like	LigPlot
7R0N	Download	Experimental	e7r0nA1	P-loop domains-like	LigPlot
7RP4	Download	Experimental	e7rp4A1 e7rp4B1	P-loop domains-like P-loop domains-like	LigPlot
6N2J	Download	Experimental	e6n2jA1	P-loop domains-like	LigPlot
6ASA	Download	Experimental	e6asaA1	P-loop domains-like	LigPlot
7EWA	Download	Experimental	e7ewaA1	P-loop domains-like	LigPlot
7C41	Download	Experimental	e7c41A1 e7c41J1 e7c41M1 e7c41G1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
5VBM	Download	Experimental	e5vbmA1	P-loop domains-like	LigPlot
6E6G	Download	Experimental	e6e6gA1	P-loop domains-like	LigPlot
7T1F	Download	Experimental	e7t1fA1 e7t1fB1 e7t1fC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
7R0M	Download	Experimental	e7r0mA1 e7r0mB1	P-loop domains-like P-loop domains-like	LigPlot
6H46	Download	Experimental	e6h46A1	P-loop domains-like	LigPlot
4WA7	Download	Experimental	e4wa7A1	P-loop domains-like	LigPlot
5V71	Download	Experimental	e5v71A1 e5v71B1 e5v71C1 e5v71D1 e5v71E1 e5v71F1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
7TLE	Download	Experimental	e7tleA1	P-loop domains-like	LigPlot
6ASE	Download	Experimental	e6aseA1	P-loop domains-like	LigPlot
8ONV	Download	Experimental	e8onvA1	P-loop domains-like	LigPlot
4Q03	Download	Experimental	e4q03A1	P-loop domains-like	LigPlot
6MQN	Download	Experimental	e6mqnA1 e6mqnB1 e6mqnB1 e6mqnC1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
6P0Z	Download	Experimental	e6p0zA1 e6p0zB1	P-loop domains-like P-loop domains-like	LigPlot
8AZR	Download	Experimental	e8azrA1	P-loop domains-like	LigPlot
4EPX	Download	Experimental	e4epxA1	P-loop domains-like	LigPlot
5W22	Download	Experimental	e5w22A1 e5w22B1	P-loop domains-like P-loop domains-like	LigPlot
7EW9	Download	Experimental	e7ew9A1 e7ew9B1 e7ew9C1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
5UK9	Download	Experimental	e5uk9A1	P-loop domains-like	LigPlot
6P8W	Download	Experimental	e6p8wA1 e6p8wB1	P-loop domains-like P-loop domains-like	LigPlot
7RT4	Download	Experimental	e7rt4A1	P-loop domains-like	LigPlot
8F0M	Download	Experimental	e8f0mA1	P-loop domains-like	LigPlot
5V9U	Download	Experimental	e5v9uA1 e5v9uB1	P-loop domains-like P-loop domains-like	LigPlot
5TAR	Download	Experimental	e5tarA1	P-loop domains-like	LigPlot
6V5L	Download	Experimental	e6v5lA1	P-loop domains-like	LigPlot
8DNI	Download	Experimental	e8dniA1	P-loop domains-like	LigPlot
7Q9U	Download	Experimental	e7q9uAAA1 e7q9uBBB1	P-loop domains-like P-loop domains-like	LigPlot
6PGP	Download	Experimental	e6pgpA1 e6pgpB1	P-loop domains-like P-loop domains-like	LigPlot
7LGI	Download	Experimental	e7lgiA1	P-loop domains-like	LigPlot
8B78	Download	Experimental	e8b78A1	P-loop domains-like	LigPlot
8STM	Download	Experimental	e8stmA1 e8stmB1 e8stmC1 e8stmD1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
4Q01	Download	Experimental	e4q01A1 e4q01B1	P-loop domains-like P-loop domains-like	LigPlot
6MQG	Download	Experimental	e6mqgA1	P-loop domains-like	LigPlot
7RT2	Download	Experimental	e7rt2A1	P-loop domains-like	LigPlot
7RT3	Download	Experimental	e7rt3A1	P-loop domains-like	LigPlot
7TLK	Download	Experimental	e7tlkA1 e7tlkB1	P-loop domains-like P-loop domains-like	LigPlot
8TXG	Download	Experimental	e8txgA1	P-loop domains-like	LigPlot
5WHB	Download	Experimental	e5whbA1 e5whbD1 e5whbG1 e5whbJ1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
8AQ7	Download	Experimental	e8aq7A1 e8aq7B1	P-loop domains-like P-loop domains-like	LigPlot
7MQU	Download	Experimental	e7mquA1	P-loop domains-like	LigPlot
7W5R	Download	Experimental	e7w5rA1 e7w5rE1 e7w5rE1 e7w5rI1 e7w5rQ1 e7w5rM1 e7w5rQ1 e7w5rU1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
4M1S	Download	Experimental	e4m1sA1 e4m1sB1 e4m1sC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
7YCC	Download	Experimental	e7yccA1 e7yccB1 e7yccC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
8G4H	Download	Experimental	e8g4hB1	P-loop domains-like	LigPlot
4M22	Download	Experimental	e4m22A1 e4m22B1 e4m22B1 e4m22C1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
5MLB	Download	Experimental	e5mlbA1 e5mlbC1 e5mlbE1 e5mlbG1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
7U8H	Download	Experimental	e7u8hA1 e7u8hB1 e7u8hC1 e7u8hD1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
4LUC	Download	Experimental	e4lucA1 e4lucB1	P-loop domains-like P-loop domains-like	LigPlot
6T5B	Download	Experimental	e6t5bA1	P-loop domains-like	LigPlot
6TAM	Download	Experimental	e6tamA1	P-loop domains-like	LigPlot
8AZZ	Download	Experimental	e8azzA1	P-loop domains-like	LigPlot
6ZL5	Download	Experimental	e6zl5A1	P-loop domains-like	LigPlot
8B00	Download	Experimental	e8b00A1	P-loop domains-like	LigPlot
4LYH	Download	Experimental	e4lyhA1 e4lyhB1 e4lyhC1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
7TLG	Download	Experimental	e7tlgA1 e7tlgB1	P-loop domains-like P-loop domains-like	LigPlot
4LRW	Download	Experimental	e4lrwA1 e4lrwB1	P-loop domains-like P-loop domains-like	LigPlot
5VP7	Download	Experimental	e5vp7A1 e5vp7F1	P-loop domains-like P-loop domains-like	LigPlot
7A1X	Download	Experimental	e7a1xA1	P-loop domains-like	LigPlot
8B6I	Download	Experimental	e8b6iA1 e8b6iB1	P-loop domains-like P-loop domains-like	LigPlot
8ECR	Download	Experimental	e8ecrA1 e8ecrB1	P-loop domains-like P-loop domains-like	LigPlot
7RPZ	Download	Experimental	e7rpzA1	P-loop domains-like	LigPlot
8AFC	Download	Experimental	e8afcA1 e8afcB1	P-loop domains-like P-loop domains-like	LigPlot
6PQ3	Download	Experimental	e6pq3A1	P-loop domains-like	LigPlot
7A1W	Download	Experimental	e7a1wA1	P-loop domains-like	LigPlot
7C40	Download	Experimental	e7c40A1	P-loop domains-like	LigPlot
4EPW	Download	Experimental	e4epwA1	P-loop domains-like	LigPlot
7NY8	Download	Experimental	e7ny8A1 e7ny8B1	P-loop domains-like P-loop domains-like	LigPlot
4LDJ	Download	Experimental	e4ldjA1	P-loop domains-like	LigPlot
8G47	Download	Experimental	e8g47B1	P-loop domains-like	LigPlot
4Q02	Download	Experimental	e4q02A1	P-loop domains-like	LigPlot
7YV1	Download	Experimental	e7yv1A1	P-loop domains-like	LigPlot
7RP2	Download	Experimental	e7rp2A1	P-loop domains-like	LigPlot
4EPT	Download	Experimental	e4eptA1	P-loop domains-like	LigPlot
8BE3	Download	Experimental	e8be3R1 e8be3A1	P-loop domains-like P-loop domains-like	LigPlot
5VQ8	Download	Experimental	e5vq8A1 e5vq8B1	P-loop domains-like P-loop domains-like	LigPlot
7A47	Download	Experimental	e7a47A1 e7a47C1 e7a47E1	P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot
4LPK	Download	Experimental	e4lpkA1 e4lpkB1	P-loop domains-like P-loop domains-like	LigPlot
6UT0	Download	Experimental	e6ut0A1 e6ut0A1 e6ut0B1 e6ut0C1 e6ut0D1 e6ut0D1	P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like P-loop domains-like	LigPlot