PDB ligand accession: NDP
DrugBank: DB02338
PubChem: 5884;134821689;
ChEMBL:
InChI Key: ACFIXJIJDZMPPO-NNYOXOHSSA-N
SMILES: c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
Drug action: n/a
ClassyFire chemical classification:
- Kingdom: Organic compounds
- Superclass: Nucleosides, nucleotides, and analogues
- Class: (5'->5')-dinucleotides
- Subclass: None
- Class: (5'->5')-dinucleotides
- Superclass: Nucleosides, nucleotides, and analogues
| PDB/AF Accession | PyMOL script | Experimental / Predicted | Interacting ECOD domains | ECOD X-group name | LigPlot |
|---|---|---|---|---|---|
| 8EL9 | Download | Experimental | e8el9A1 e8el9A2 e8el9A3 e8el9B1 e8el9B2 e8el9B3 e8el9C1 e8el9C2 e8el9C3 e8el9D1 e8el9D2 e8el9D3 | Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases Barrel domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases | LigPlot |
| 1DGF | Download | Experimental | e1dgfA1 e1dgfA2 e1dgfA3 e1dgfC1 e1dgfC2 e1dgfC3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 7VD9 | Download | Experimental | e7vd9A1 e7vd9A2 e7vd9A3 e7vd9B1 e7vd9B2 e7vd9B3 e7vd9C1 e7vd9C2 e7vd9C3 e7vd9D1 e7vd9D2 e7vd9D3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 1DGG | Download | Experimental | e1dggA1 e1dggA2 e1dggA3 e1dggC1 e1dggC2 e1dggC3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 7P8W | Download | Experimental | e7p8wA1 e7p8wA2 e7p8wA3 e7p8wB1 e7p8wB2 e7p8wB3 e7p8wC1 e7p8wC2 e7p8wC3 e7p8wD1 e7p8wD2 e7p8wD3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 1DGH | Download | Experimental | e1dghA1 e1dghA2 e1dghA3 e1dghC1 e1dghC2 e1dghC3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |
| 1DGB | Download | Experimental | e1dgbA1 e1dgbA2 e1dgbA3 e1dgbC1 e1dgbC2 e1dgbC3 | Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Barrel domain in heme-dependent catalases First alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases | LigPlot |