Ligand name: SODIUM ION
PDB ligand accession: NA
DrugBank: n/a
PubChem: 923
ChEMBL: n/a
InChI Key: FKNQFGJONOIPTF-UHFFFAOYSA-N
SMILES: [Na+]
Drug action: n/a

ClassyFire chemical classification:

List of PDB structures and/or AlphaFold models with target protein P0DTD1

PDB/AF Accession PyMOL script Experimental / Predicted Interacting ECOD domains ECOD X-group name LigPlot
8DRR Download Experimental e8drrA2
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
6WKQ Download Experimental e6wkqA1
e6wkqC1
Rossmann-like
Rossmann-like
LigPlot
8DS2 Download Experimental e8ds2A1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
8AEB Download Experimental e8aebA1
e8aebA2
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
cradle loop barrel
LigPlot
7JYC Download Experimental e7jycA1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
6X4I Download Experimental e6x4iB2
Rossmann-like
LigPlot
8DRX Download Experimental e8drxA2
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7BB2 Download Experimental e7bb2B1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7BE7 Download Experimental e7be7B2
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7TGR Download Experimental e7tgrA1
cradle loop barrel
LigPlot
6Z2E Download Experimental e6z2eAAA1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7BFB Download Experimental e7bfbA2
e7bfbB1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
6Z5T Download Experimental e6z5tA1
e6z5tB1
Macro domain-like
Macro domain-like
LigPlot
7Q5E Download Experimental e7q5eB2
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
8OKL Download Experimental e8oklA2
e8oklB2
cradle loop barrel
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
6XBG Download Experimental e6xbgB1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
8OKM Download Experimental e8okmB1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7Q5F Download Experimental e7q5fB1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
6Z72 Download Experimental e6z72A1
e6z72B1
e6z72C1
e6z72D1
Macro domain-like
Macro domain-like
Macro domain-like
Macro domain-like
LigPlot
7RC0 Download Experimental e7rc0A2
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7B3E Download Experimental e7b3eB2
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7ULT Download Experimental e7ultA1
e7ultC1
e7ultB1
e7ultC1
e7ultD1
Rossmann-like
Rossmann-like
Coronavirus NSP10-like
Rossmann-like
Coronavirus NSP10-like
LigPlot
7Z3U Download Experimental e7z3uA2
cradle loop barrel
LigPlot
7JZ0 Download Experimental e7jz0A1
e7jz0B1
e7jz0C1
e7jz0D1
Rossmann-like
Coronavirus NSP10-like
Rossmann-like
Coronavirus NSP10-like
LigPlot
7PFL Download Experimental e7pflA1
cradle loop barrel
LigPlot
8AJ0 Download Experimental e8aj0AAA2
e8aj0BBB1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7BGP Download Experimental e7bgpB2
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
8OKN Download Experimental e8oknA1
e8oknB1
cradle loop barrel
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7LYI Download Experimental e7lyiA1
cradle loop barrel
LigPlot
6XBH Download Experimental e6xbhA2
cradle loop barrel
LigPlot
6WJT Download Experimental e6wjtA1
e6wjtB1
e6wjtC1
e6wjtD1
Rossmann-like
Coronavirus NSP10-like
Rossmann-like
Coronavirus NSP10-like
LigPlot
8DS1 Download Experimental e8ds1A1
e8ds1F1
e8ds1G1
e8ds1K1
e8ds1L1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7GNM Download Experimental e7gnmB1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
8F4S Download Experimental e8f4sA1
e8f4sB1
Rossmann-like
Coronavirus NSP10-like
LigPlot
7PHZ Download Experimental e7phzB2
cradle loop barrel
LigPlot
6XBI Download Experimental e6xbiA1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
8OKK Download Experimental e8okkA2
e8okkB2
cradle loop barrel
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7CB7 Download Experimental e7cb7A1
e7cb7B1
cradle loop barrel
cradle loop barrel
LigPlot
6Z6I Download Experimental e6z6iA1
e6z6iB1
e6z6iC1
e6z6iD1
Macro domain-like
Macro domain-like
Macro domain-like
Macro domain-like
LigPlot
6W75 Download Experimental e6w75B1
e6w75A1
e6w75B1
e6w75C1
e6w75D1
Coronavirus NSP10-like
Rossmann-like
Coronavirus NSP10-like
Rossmann-like
Coronavirus NSP10-like
LigPlot
7NF5 Download Experimental e7nf5A2
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
8DRW Download Experimental e8drwA1
e8drwB2
e8drwC1
e8drwD2
e8drwA1
e8drwE2
e8drwF1
e8drwH2
e8drwI2
e8drwJ2
e8drwL2
e8drwM2
e8drwN1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
7NBY Download Experimental e7nbyB1
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
LigPlot
8DRZ Download Experimental e8drzB1
e8drzC2
e8drzE2
e8drzA2
e8drzF1
e8drzD2
e8drzG1
cradle loop barrel
cradle loop barrel
cradle loop barrel
cradle loop barrel
cradle loop barrel
cradle loop barrel
cradle loop barrel
LigPlot
7GNP Download Experimental e7gnpA1
cradle loop barrel
LigPlot
7JYY Download Experimental e7jyyA1
e7jyyB1
e7jyyC1
e7jyyD1
Rossmann-like
Coronavirus NSP10-like
Rossmann-like
Coronavirus NSP10-like
LigPlot
8F4Y Download Experimental e8f4yB1
e8f4yA1
e8f4yB1
Coronavirus NSP10-like
Rossmann-like
Coronavirus NSP10-like
LigPlot