PDB ligand accession: GOL
DrugBank: DB09462
PubChem:
ChEMBL:
InChI Key: PEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES: C(C(CO)O)O
Drug action: n/a
ClassyFire chemical classification:
- Kingdom: Organic compounds
- Superclass: Organic oxygen compounds
- Class: Organooxygen compounds
- Subclass: Carbohydrates and carbohydrate conjugates
- Class: Organooxygen compounds
- Superclass: Organic oxygen compounds
| PDB/AF Accession | PyMOL script | Experimental / Predicted | Interacting ECOD domains | ECOD X-group name | LigPlot |
|---|---|---|---|---|---|
| 5YTF | Download | Experimental | e5ytfA2 e5ytfA3 e5ytfA4 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 3RR7 | Download | Experimental | e3rr7A6 e3rr7A8 | "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 4DLG | Download | Experimental | e4dlgA2 e4dlgA2 e4dlgA4 | "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Ribonuclease H-like | LigPlot |
| 3RRG | Download | Experimental | e3rrgA6 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 3LWM | Download | Experimental | e3lwmA2 e3lwmA2 e3lwmA3 | "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 5Z3N | Download | Experimental | e5z3nA1 e5z3nA3 e5z3nA4 | Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 4C8K | Download | Experimental | e4c8kA1 e4c8kA2 e4c8kA3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 3RTV | Download | Experimental | e3rtvA1 e3rtvA3 e3rtvA1 e3rtvA2 e3rtvA3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 3RR8 | Download | Experimental | e3rr8A6 e3rr8A7 e3rr8A8 | "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 4ELT | Download | Experimental | e4eltA5 e4eltA6 e4eltA7 e4eltA6 e4eltA7 | Ribonuclease H-like "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |
| 3OJS | Download | Experimental | e3ojsA2 e3ojsA1 e3ojsA2 e3ojsA3 | "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 5YTG | Download | Experimental | e5ytgA1 e5ytgA3 e5ytgA4 | Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |
| 3LWL | Download | Experimental | e3lwlA1 e3lwlA2 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 3T3F | Download | Experimental | e3t3fA5 e3t3fA6 e3t3fA6 e3t3fA7 | Ribonuclease H-like "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |
| 3SYZ | Download | Experimental | e3syzA7 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |
| 5YTH | Download | Experimental | e5ythA3 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 5E41 | Download | Experimental | e5e41A3 e5e41A1 e5e41A4 | Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 3OJU | Download | Experimental | e3ojuA1 e3ojuA2 e3ojuA3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 4ELV | Download | Experimental | e4elvA2 e4elvA3 | "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 4C8M | Download | Experimental | e4c8mA1 e4c8mA2 e4c8mA3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 5YTE | Download | Experimental | e5yteA3 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 4ELU | Download | Experimental | e4eluA11 e4eluA10 e4eluA11 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |
| 5SZT | Download | Experimental | e5sztA1 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 3SV3 | Download | Experimental | e3sv3A2 e3sv3A4 | "fingers" domain in bacteriophage RB69-like DNA polymerase I Ribonuclease H-like | LigPlot |
| 5O7T | Download | Experimental | e5o7tA2 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |
| 3PO4 | Download | Experimental | e3po4A1 e3po4A2 e3po4A3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 4N56 | Download | Experimental | e4n56A1 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 4DLE | Download | Experimental | e4dleA10 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 4N5S | Download | Experimental | e4n5sA1 e4n5sA2 | Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |
| 3PY8 | Download | Experimental | e3py8A2 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 4C8L | Download | Experimental | e4c8lA2 e4c8lA3 | "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 3RRH | Download | Experimental | e3rrhA6 e3rrhA7 e3rrhA8 e3rrhA6 e3rrhA7 | "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits "fingers" domain in bacteriophage RB69-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I | LigPlot |
| 3M8S | Download | Experimental | e3m8sA1 e3m8sA3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 3M8R | Download | Experimental | e3m8rA2 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |
| 3SZ2 | Download | Experimental | e3sz2A5 e3sz2A6 | Ribonuclease H-like "fingers" domain in bacteriophage RB69-like DNA polymerase I | LigPlot |