Ligand name: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine
PDB ligand accession: XG4
DrugBank: n/a
PubChem: 465709;135499669;
ChEMBL: n/a
InChI Key: DWGAAFQEGIMTIA-KVQBGUIXSA-N
SMILES: c1nc2c(n1C3CC(C(O3)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
Drug action: n/a

ClassyFire chemical classification:

List of PDB structures and/or AlphaFold models with target protein P19821

PDB/AF Accession PyMOL script Experimental / Predicted Interacting ECOD domains ECOD X-group name LigPlot
6FBF Download Experimental e6fbfA1
e6fbfA2
e6fbfA4
helical bundle in Bacillus stearothermophilus-like DNA polymerase I
"fingers" domain in bacteriophage RB69-like DNA polymerase I
Alpha-beta plaits
LigPlot
6FBG Download Experimental e6fbgA1
e6fbgA3
e6fbgA4
Alpha-beta plaits
helical bundle in Bacillus stearothermophilus-like DNA polymerase I
"fingers" domain in bacteriophage RB69-like DNA polymerase I
LigPlot
6FBE Download Experimental e6fbeA1
e6fbeA3
e6fbeA4
"fingers" domain in bacteriophage RB69-like DNA polymerase I
Alpha-beta plaits
helical bundle in Bacillus stearothermophilus-like DNA polymerase I
LigPlot
6FBI Download Experimental e6fbiA1
e6fbiA2
e6fbiA4
helical bundle in Bacillus stearothermophilus-like DNA polymerase I
Alpha-beta plaits
"fingers" domain in bacteriophage RB69-like DNA polymerase I
LigPlot
6FBD Download Experimental e6fbdA2
e6fbdA3
e6fbdA4
"fingers" domain in bacteriophage RB69-like DNA polymerase I
Alpha-beta plaits
helical bundle in Bacillus stearothermophilus-like DNA polymerase I
LigPlot
6FBC Download Experimental e6fbcA2
e6fbcA3
e6fbcA4
"fingers" domain in bacteriophage RB69-like DNA polymerase I
Alpha-beta plaits
helical bundle in Bacillus stearothermophilus-like DNA polymerase I
LigPlot
6FBH Download Experimental e6fbhA1
e6fbhA3
e6fbhA4
helical bundle in Bacillus stearothermophilus-like DNA polymerase I
"fingers" domain in bacteriophage RB69-like DNA polymerase I
Alpha-beta plaits
LigPlot