PDB ligand accession: NAG
DrugBank: DB00141
PubChem:
ChEMBL:
InChI Key: OVRNDRQMDRJTHS-FMDGEEDCSA-N
SMILES: CC(=O)NC1C(C(C(OC1O)CO)O)O
Drug action: n/a
ClassyFire chemical classification:
- Kingdom: Organic compounds
- Superclass: Organic oxygen compounds
- Class: Organooxygen compounds
- Subclass: Carbohydrates and carbohydrate conjugates
- Class: Organooxygen compounds
- Superclass: Organic oxygen compounds
| PDB/AF Accession | PyMOL script | Experimental / Predicted | Interacting ECOD domains | ECOD X-group name | LigPlot |
|---|---|---|---|---|---|
| 2AJF | Download | Experimental | e2ajfE1 e2ajfF1 | Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain | LigPlot |
| 8H15 | Download | Experimental | e8h15A3 e8h15B3 e8h15B4 e8h15C1 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein jelly-roll | LigPlot |
| 6CRV | Download | Experimental | e6crvA2 e6crvB3 e6crvB2 e6crvC1 e6crvA3 e6crvC2 e6crvC2 e6crvA3 e6crvA2 e6crvB3 e6crvB2 e6crvC1 | Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 8SPI | Download | Experimental | e8spiE1 e8spiF1 | Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain | LigPlot |
| 8SPH | Download | Experimental | e8sphE1 | Coronavirus spike protein receptor-binding domain | LigPlot |
| 8H14 | Download | Experimental | e8h14A2 e8h14B3 e8h14C2 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 8H16 | Download | Experimental | e8h16B2 e8h16A1 e8h16C2 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 7WR9 | Download | Experimental | e7wr9F1 | Coronavirus spike protein receptor-binding domain | LigPlot |
| 7ZH1 | Download | Experimental | e7zh1A3 e7zh1B1 e7zh1C1 e7zh1B3 e7zh1C3 e7zh1A1 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain | LigPlot |
| 8H12 | Download | Experimental | e8h12A2 e8h12B3 e8h12B3 e8h12C2 e8h12A2 e8h12C2 e8h12C4 e8h12A3 e8h12B2 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain | LigPlot |
| 7X2J | Download | Experimental | e7x2jS1 | Coronavirus spike protein receptor-binding domain | LigPlot |
| 7ZH5 | Download | Experimental | e7zh5A3 e7zh5B1 e7zh5B1 e7zh5C2 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 7SG4 | Download | Experimental | e7sg4A2 e7sg4B2 e7sg4C2 | jelly-roll jelly-roll jelly-roll | LigPlot |
| 8H0Y | Download | Experimental | e8h0yB4 e8h0yA2 e8h0yC4 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 5X4S | Download | Experimental | e5x4sA1 | jelly-roll | LigPlot |
| 8H0X | Download | Experimental | e8h0xA1 e8h0xB4 e8h0xC2 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 2DD8 | Download | Experimental | e2dd8S1 | Coronavirus spike protein receptor-binding domain | LigPlot |
| 6WAQ | Download | Experimental | e6waqD1 e6waqB1 | Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain | LigPlot |
| 3D0H | Download | Experimental | e3d0hE1 | Coronavirus spike protein receptor-binding domain | LigPlot |
| 6NB6 | Download | Experimental | e6nb6A1 e6nb6B4 e6nb6C4 e6nb6A3 e6nb6A4 e6nb6A2 e6nb6B2 e6nb6C3 e6nb6C2 | Beta domain of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein jelly-roll Coronavirus spike protein receptor-binding domain S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein jelly-roll S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 3D0I | Download | Experimental | e3d0iE1 | Coronavirus spike protein receptor-binding domain | LigPlot |
| 7FC6 | Download | Experimental | e7fc6S1 | Coronavirus spike protein receptor-binding domain | LigPlot |
| 6CS1 | Download | Experimental | e6cs1B2 e6cs1C1 e6cs1A4 e6cs1A4 e6cs1A2 e6cs1B4 e6cs1C2 e6cs1C1 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 6CS2 | Download | Experimental | e6cs2A2 e6cs2A3 e6cs2B1 e6cs2A1 e6cs2C3 e6cs2C1 e6cs2A1 e6cs2B4 e6cs2C3 | jelly-roll Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 7ZH2 | Download | Experimental | e7zh2A2 e7zh2B1 e7zh2C1 e7zh2B4 e7zh2C3 e7zh2A3 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain | LigPlot |
| 6CRX | Download | Experimental | e6crxB3 e6crxC1 e6crxA3 e6crxA1 e6crxC2 e6crxA4 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein jelly-roll Beta domain of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 8H0Z | Download | Experimental | e8h0zB3 e8h0zC4 e8h0zA2 e8h0zC4 e8h0zA3 e8h0zC3 e8h0zB2 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain | LigPlot |
| 5X58 | Download | Experimental | e5x58A4 e5x58B4 e5x58B2 e5x58C1 | Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein jelly-roll jelly-roll | LigPlot |
| 6CS0 | Download | Experimental | e6cs0A1 e6cs0B3 e6cs0B3 e6cs0A1 e6cs0C3 e6cs0A4 e6cs0A1 e6cs0C1 e6cs0C3 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein jelly-roll S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 6VW1 | Download | Experimental | e6vw1E1 e6vw1F1 | Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain | LigPlot |
| 8H13 | Download | Experimental | e8h13A1 e8h13B1 e8h13C1 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 3D0G | Download | Experimental | e3d0gE1 | Coronavirus spike protein receptor-binding domain | LigPlot |
| 8H10 | Download | Experimental | e8h10A2 e8h10B1 e8h10C4 e8h10C2 e8h10A3 e8h10B3 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain | LigPlot |
| 6NB7 | Download | Experimental | e6nb7A1 e6nb7B1 e6nb7C2 e6nb7A4 e6nb7A2 e6nb7A3 e6nb7B4 e6nb7C1 e6nb7C3 | Beta domain of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein jelly-roll Coronavirus spike protein receptor-binding domain S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Coronavirus spike protein receptor-binding domain S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 8H11 | Download | Experimental | e8h11B3 e8h11A4 e8h11C3 e8h11A2 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Coronavirus spike protein receptor-binding domain | LigPlot |
| 6CRZ | Download | Experimental | e6crzA3 e6crzB3 e6crzB3 e6crzA3 e6crzC2 e6crzA1 e6crzA3 e6crzC3 e6crzC2 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein Beta domain of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein jelly-roll S2 subunit of coronavirus spike glycoprotein | LigPlot |
| 6CRW | Download | Experimental | e6crwA1 e6crwB2 e6crwB2 e6crwA1 e6crwC2 e6crwA1 e6crwB3 e6crwB2 e6crwC2 e6crwC3 e6crwC2 | S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein jelly-roll S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein jelly-roll S2 subunit of coronavirus spike glycoprotein | LigPlot |