Ligand name: GUANOSINE-5'-DIPHOSPHATE
PDB ligand accession: GDP
DrugBank: DB04315
PubChem: 8977;5280316;135398619;
ChEMBL: CHEMBL384759
InChI Key: QGWNDRXFNXRZMB-UUOKFMHZSA-N
SMILES: c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
Drug action: n/a

ClassyFire chemical classification:

• Kingdom: Organic compounds
  • Superclass: Nucleosides, nucleotides, and analogues
    • Class: Purine nucleotides
      • Subclass: Purine ribonucleotides

List of PDB structures and/or AlphaFold models with target protein P62820

PDB/AF Accession	PyMOL script	Experimental / Predicted	Interacting ECOD domains	ECOD X-group name	LigPlot
4IRU	Download	Experimental	e4iruB1 e4iruA3 e4iruD1 e4iruC3 e4iruF1 e4iruE3	P-loop domains-like LepB GAP domain N-terminal subdomain P-loop domains-like LepB GAP domain N-terminal subdomain P-loop domains-like LepB GAP domain N-terminal subdomain	LigPlot
4FMD	Download	Experimental	e4fmdA2 e4fmdB1 e4fmdC2 e4fmdD1 e4fmdE2 e4fmdF2	LEE-encoded effector EspG C-terminal domain-related P-loop domains-like LEE-encoded effector EspG C-terminal domain-related P-loop domains-like LEE-encoded effector EspG C-terminal domain-related P-loop domains-like	LigPlot
3SFV	Download	Experimental	e3sfvA1 e3sfvB1	P-loop domains-like LidA	LigPlot
2FOL	Download	Experimental	e2folA1	P-loop domains-like	LigPlot
4FME	Download	Experimental	e4fmeA2 e4fmeB1 e4fmeD2 e4fmeE1	LEE-encoded effector EspG C-terminal domain-related P-loop domains-like LEE-encoded effector EspG C-terminal domain-related P-loop domains-like	LigPlot
4FMB	Download	Experimental	e4fmbA2 e4fmbB1 e4fmbC2 e4fmbD1 e4fmbE2 e4fmbF1	LEE-encoded effector EspG C-terminal domain-related P-loop domains-like LEE-encoded effector EspG C-terminal domain-related P-loop domains-like LEE-encoded effector EspG C-terminal domain-related P-loop domains-like	LigPlot
7EQ2	Download	Experimental	e7eq2A1 e7eq2B1	P-loop domains-like P-loop domains-like	LigPlot
4JVS	Download	Experimental	e4jvsA2 e4jvsB1	LepB GAP domain N-terminal subdomain P-loop domains-like	LigPlot
4FMC	Download	Experimental	e4fmcA2 e4fmcB1 e4fmcC2 e4fmcD1 e4fmcE2 e4fmcF1	LEE-encoded effector EspG C-terminal domain-related P-loop domains-like LEE-encoded effector EspG C-terminal domain-related P-loop domains-like LEE-encoded effector EspG C-terminal domain-related P-loop domains-like	LigPlot