PDB ligand accession: NAG
DrugBank: DB00141
PubChem:
ChEMBL:
InChI Key: OVRNDRQMDRJTHS-FMDGEEDCSA-N
SMILES: CC(=O)NC1C(C(C(OC1O)CO)O)O
Drug action: n/a
ClassyFire chemical classification:
- Kingdom: Organic compounds
- Superclass: Organic oxygen compounds
- Class: Organooxygen compounds
- Subclass: Carbohydrates and carbohydrate conjugates
- Class: Organooxygen compounds
- Superclass: Organic oxygen compounds
| PDB/AF Accession | PyMOL script | Experimental / Predicted | Interacting ECOD domains | ECOD X-group name | LigPlot |
|---|---|---|---|---|---|
| 4TVP | Download | Experimental | e4tvpG2 e4tvpB1 e4tvpG3 e4tvpG1 e4tvpG3 e4tvpG1 | V1/V2 domain in HIV gp120 MPER trimer gp120 inner domain Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 8FYJ | Download | Experimental | e8fyjA1 e8fyjA2 e8fyjB1 e8fyjB2 e8fyjC3 e8fyjA1 | Ribosomal protein L31e-like gp120 inner domain gp120 inner domain Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like | LigPlot |
| 7L8E | Download | Experimental | e7l8eC1 e7l8eD1 e7l8eE1 e7l8eE3 e7l8eF1 e7l8eA1 e7l8eB1 e7l8eC1 e7l8eC2 e7l8eC3 e7l8eE1 e7l8eE2 e7l8eE3 e7l8eE1 e7l8eA1 e7l8eA2 e7l8eA3 | Ribosomal protein L31e-like MPER trimer Ribosomal protein L31e-like V1/V2 domain in HIV gp120 MPER trimer Ribosomal protein L31e-like MPER trimer Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 | LigPlot |
| 6CDE | Download | Experimental | e6cdeC1 e6cdec2 e6cde23 e6cdeC2 e6cdeC1 e6cdeC3 e6cdec3 e6cdec1 e6cdec2 e6cde21 e6cde22 e6cde23 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like V1/V2 domain in HIV gp120 Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 5U7M | Download | Experimental | e5u7mB1 e5u7mG2 e5u7mG1 e5u7mG3 e5u7mG3 e5u7mG1 e5u7mG2 | MPER trimer Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 6CDI | Download | Experimental | e6cdid1 e6cdi22 e6cdiC2 e6cdid2 e6cdid3 e6cdid1 e6cdid3 e6cdi21 e6cdi23 e6cdi22 e6cdi23 e6cdiC3 e6cdiC1 e6cdiC1 e6cdiC2 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 7KLC | Download | Experimental | e7klcA2 e7klcA1 e7klcA2 | Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 5U7O | Download | Experimental | e5u7oB1 e5u7oG2 e5u7oG1 e5u7oG3 e5u7oG3 | MPER trimer Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 | LigPlot |
| 6CRQ | Download | Experimental | e6crqA3 e6crqB1 e6crqF3 e6crqA1 e6crqA3 e6crqA2 e6crqB1 e6crqB3 e6crqB2 e6crqF1 e6crqF3 e6crqF2 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 | LigPlot |
| 7L8G | Download | Experimental | e7l8gC1 e7l8gD1 e7l8gE1 e7l8gF1 e7l8gA1 e7l8gB1 e7l8gC1 e7l8gC2 e7l8gC3 e7l8gE3 e7l8gE2 e7l8gA1 e7l8gA2 e7l8gA3 | Ribosomal protein L31e-like MPER trimer Ribosomal protein L31e-like MPER trimer Ribosomal protein L31e-like MPER trimer Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 | LigPlot |
| 7L8F | Download | Experimental | e7l8fC1 e7l8fD1 e7l8fE2 e7l8fF1 e7l8fA1 e7l8fB1 e7l8fC1 e7l8fC3 e7l8fC2 e7l8fE1 e7l8fE2 e7l8fE3 e7l8fA1 e7l8fA2 | Ribosomal protein L31e-like MPER trimer Ribosomal protein L31e-like MPER trimer Ribosomal protein L31e-like MPER trimer Ribosomal protein L31e-like gp120 inner domain V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 Ribosomal protein L31e-like gp120 inner domain | LigPlot |
| 8C8T | Download | Experimental | e8c8tA2 e8c8tF2 e8c8tG2 e8c8tA1 e8c8tF1 e8c8tF3 e8c8tG1 e8c8tG2 | Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 7UGO | Download | Experimental | e7ugoA1 e7ugoB3 e7ugoB3 e7ugoC2 e7ugoD1 e7ugoE1 e7ugoF1 e7ugoA2 e7ugoA3 e7ugoA2 e7ugoB1 e7ugoB2 e7ugoB2 e7ugoC1 e7ugoC3 e7ugoC1 e7ugoC2 | V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 MPER trimer MPER trimer MPER trimer Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 | LigPlot |
| 8TTW | Download | Experimental | e8ttwA1 e8ttwB1 e8ttwB1 e8ttwE3 e8ttwF1 e8ttwF1 e8ttwI2 e8ttwJ1 e8ttwJ1 | gp120 inner domain MPER trimer MPER trimer gp120 inner domain MPER trimer MPER trimer gp120 inner domain MPER trimer MPER trimer | LigPlot |
| 6VY2 | Download | Experimental | e6vy2B1 e6vy2D1 e6vy2F1 | MPER trimer MPER trimer MPER trimer | LigPlot |
| 8FYI | Download | Experimental | e8fyiA2 e8fyiB2 e8fyiB3 e8fyiC2 e8fyiA1 e8fyiB1 e8fyiC1 e8fyiC2 | Ribosomal protein L31e-like Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 gp120 inner domain Ribosomal protein L31e-like | LigPlot |
| 6CM3 | Download | Experimental | e6cm3D1 e6cm3D2 e6cm3E1 e6cm3E2 e6cm3F1 e6cm3F2 e6cm3D1 e6cm3G1 e6cm3E1 e6cm3I1 e6cm3F2 e6cm3H1 | Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like gp120 inner domain gp120 inner domain Ribosomal protein L31e-like Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich Ribosomal protein L31e-like Immunoglobulin-like beta-sandwich | LigPlot |
| 6DFH | Download | Experimental | e6dfhB1 e6dfhE1 e6dfhF1 | MPER trimer MPER trimer MPER trimer | LigPlot |
| 7UGN | Download | Experimental | e7ugnA2 e7ugnB3 e7ugnC1 e7ugnD1 e7ugnE1 e7ugnF1 e7ugnA3 e7ugnA1 e7ugnA1 e7ugnA2 e7ugnB2 e7ugnB1 e7ugnB1 e7ugnB3 e7ugnC2 e7ugnC1 e7ugnC3 | Ribosomal protein L31e-like Ribosomal protein L31e-like Ribosomal protein L31e-like MPER trimer MPER trimer MPER trimer V1/V2 domain in HIV gp120 gp120 inner domain gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 gp120 inner domain gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 Ribosomal protein L31e-like gp120 inner domain | LigPlot |
| 7UGP | Download | Experimental | e7ugpA3 e7ugpC2 e7ugpA3 e7ugpB1 e7ugpB1 e7ugpC2 e7ugpD1 e7ugpE1 e7ugpF1 e7ugpA1 e7ugpA1 e7ugpA3 e7ugpA1 e7ugpA2 e7ugpB3 e7ugpB1 e7ugpB3 e7ugpB2 e7ugpB3 e7ugpC1 e7ugpC2 | V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 MPER trimer MPER trimer MPER trimer Ribosomal protein L31e-like Ribosomal protein L31e-like V1/V2 domain in HIV gp120 Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like V1/V2 domain in HIV gp120 Ribosomal protein L31e-like gp120 inner domain Ribosomal protein L31e-like Ribosomal protein L31e-like V1/V2 domain in HIV gp120 | LigPlot |