PDB ligand accession: D3T
DrugBank: n/a
PubChem:
ChEMBL:
InChI Key: URGJWIFLBWJRMF-JGVFFNPUSA-N
SMILES: CC1=CN(C(=O)NC1=O)C2CCC(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O
Drug action: n/a
ClassyFire chemical classification:
- Kingdom: Organic compounds
- Superclass: Nucleosides, nucleotides, and analogues
- Class: Pyrimidine nucleotides
- Subclass: Pyrimidine deoxyribonucleotides
- Class: Pyrimidine nucleotides
- Superclass: Nucleosides, nucleotides, and analogues
| PDB/AF Accession | PyMOL script | Experimental / Predicted | Interacting ECOD domains | ECOD X-group name | LigPlot |
|---|---|---|---|---|---|
| 4EZ9 | Download | Experimental | e4ez9D1 e4ez9D2 e4ez9D3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 2HHW | Download | Experimental | e2hhwA1 e2hhwA2 e2hhwA3 e2hhwD1 e2hhwD2 e2hhwD3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 4F3O | Download | Experimental | e4f3oD1 e4f3oD2 e4f3oD3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 3PV8 | Download | Experimental | e3pv8A1 e3pv8A2 e3pv8A3 e3pv8D1 e3pv8D2 e3pv8D3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |
| 3HP6 | Download | Experimental | e3hp6A1 e3hp6A2 e3hp6A3 e3hp6D1 e3hp6D2 e3hp6D3 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits helical bundle in Bacillus stearothermophilus-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I Alpha-beta plaits | LigPlot |