PDB Ligand Accession
Browse small molecules by PDB ligand accession and use Explore to open matching proteins.
37373 molecules found
| DrugDomain Data | DrugBank ID | PDB Ligand | Ligand Name | Kingdom | Superclass | Class | Subclass |
|---|---|---|---|---|---|---|---|
| Explore | n/a | 04C | 1,2,4-trideoxy-4-methyl-2-{[N-(morpholin-4-ylacetyl)-L-alanyl-O-methyl-L-tyrosyl]amino}-1-phenyl-D-xylitol | Organic compounds | Organic acids and derivatives | Carboxylic acids and derivatives | Amino acids, peptides, and analogues |
| Explore | n/a | 04G | 7-hydroxy-3H-phenoxazin-3-one | Organic compounds | Organoheterocyclic compounds | Benzoxazines | Phenoxazines |
| Explore | DB08878 | 04J | Aminopterin | Organic compounds | Organoheterocyclic compounds | Pteridines and derivatives | Pterins and derivatives |
| Explore | n/a | 04K | 2-({4-[2-(diethylamino)ethoxy]phenyl}amino)-6-(4-fluorophenoxy)-8-methylpyrido[2,3-d]pyrimidin-7(8H)-one | Organic compounds | Organic oxygen compounds | Organooxygen compounds | Ethers |
| Explore | n/a | 04L | 2-methyl-N-(2-phenyl-3H-imidazo[4,5-b]pyridin-6-yl)-5-{[(2E)-3-phenylprop-2-enoyl]amino}benzamide | Organic compounds | Benzenoids | Benzene and substituted derivatives | Benzoic acids and derivatives |
| Explore | n/a | 04M | 5-(morpholin-4-ylsulfonyl)-2-{[3-(octyloxy)benzyl]oxy}benzoic acid | Organic compounds | Benzenoids | Benzene and substituted derivatives | Benzenesulfonamides |
| Explore | n/a | 04R | [3-(trifluoromethyl)-4,5,6,7-tetrahydro-1H-indazol-1-yl]acetic acid | Organic compounds | Organic acids and derivatives | Carboxylic acids and derivatives | Amino acids, peptides, and analogues |
| Explore | n/a | 04T | N-(4-{[4-(methylsulfonyl)-2-nitrophenyl]amino}phenyl)acetamide | Organic compounds | Benzenoids | Benzene and substituted derivatives | Aniline and substituted anilines |
| Explore | n/a | 04W | 2-{[3-(decyloxy)benzyl]oxy}-5-nitrobenzoic acid | Organic compounds | Benzenoids | Benzene and substituted derivatives | Benzoic acids and derivatives |
| Explore | n/a | 04Y | N-cyclopropyl-1-(4-phenylpyridin-3-yl)piperidine-4-carboxamide | n/a | n/a | n/a | n/a |
| Explore | n/a | 04Z | 4-{[4-amino-5-(3-methoxybenzoyl)-1,3-thiazol-2-yl]amino}benzenesulfonamide | Organic compounds | Organic oxygen compounds | Organooxygen compounds | Carbonyl compounds |
| Explore | n/a | 051 | (1R,3R,4S)-4-[({6-[(4-CYANO-2-FLUOROBENZYL)OXY]NAPHTHALEN-2-YL}SULFONYL)AMINO]CYCLOHEXANE-1,3-DICARBOXYLIC ACID | Organic compounds | Benzenoids | Naphthalenes | Naphthalene sulfonic acids and derivatives |
| Explore | n/a | 052 | N-cyclopropyl-2-methyl-4-(7-{[2-(morpholin-4-yl)ethyl]amino}-5-phenoxypyrazolo[1,5-a]pyrimidin-3-yl)benzamide | Organic compounds | Organoheterocyclic compounds | Azoles | Pyrazoles |
| Explore | n/a | 053 | 1-[(2-aminopyridin-4-yl)methyl]-3-(2-oxo-1,2-dihydropyridin-3-yl)-5-(trifluoromethyl)-1H-indole-2-carboxylic acid | Organic compounds | Organoheterocyclic compounds | Indoles and derivatives | Indolecarboxylic acids and derivatives |
| Explore | n/a | 054 | 1-[(2-aminopyridin-4-yl)methyl]-3-(2,4-dioxo-1,2-dihydrothieno[3,4-d]pyrimidin-3(4H)-yl)-5-(trifluoromethyl)-1H-indole-2-carboxylic acid | Organic compounds | Organoheterocyclic compounds | Indoles and derivatives | Indolecarboxylic acids and derivatives |
| Explore | n/a | 055 | (2S)-{[(3-{[(2-chloro-6-methylphenyl)carbamoyl]amino}naphthalen-2-yl)carbonyl]amino}(phenyl)ethanoic acid | Organic compounds | Benzenoids | Naphthalenes | Naphthalenecarboxylic acids and derivatives |
| Explore | n/a | 056 | 3-[(2,4-DICHLOROPHENYL)METHYLSULFANYLMETHYL]BENZOIC ACID | Organic compounds | Benzenoids | Benzene and substituted derivatives | Benzoic acids and derivatives |
| Explore | DB06834 | 057 | N-(2-hydroxy-1,1-dimethylethyl)-1-methyl-3-(1H-pyrrolo[2,3-b]pyridin-2-yl)-1H-indole-5-carboxamide | Organic compounds | Organoheterocyclic compounds | Indoles and derivatives | Indolecarboxylic acids and derivatives |
| Explore | n/a | 058 | 1-benzyl-5-chloro-3-(2-fluorophenyl)-1H-indole-2-carboxylic acid | Organic compounds | Organoheterocyclic compounds | Indoles and derivatives | Indolecarboxylic acids and derivatives |
| Explore | DB06835 | 059 | (2S)-2-[3-(AMINOMETHYL)PHENYL]-3-{(S)-HYDROXY[(1R)-2-METHYL-1-{[(2-PHENYLETHYL)SULFONYL]AMINO}PROPYL]PHOSPHORYL}PROPANOIC ACID | Organic compounds | Benzenoids | Benzene and substituted derivatives | Phenylmethylamines |
| Explore | n/a | 05B | 2'-[2-(1,3-benzodioxol-5-yl)pyrimidin-4-yl]-5',6'-dihydrospiro[piperidine-4,7'-pyrrolo[3,2-c]pyridin]-4'(1'H)-one | Organic compounds | Organoheterocyclic compounds | Pyrrolopyridines | n/a |
| Explore | n/a | 05C | 7-(8-methylnaphthalen-1-yl)-4-[(2~{R})-2-methylpiperazin-1-yl]-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine | n/a | n/a | n/a | n/a |
| Explore | n/a | 05D | N,N-dimethyl-1-[4-(4-methyl-1H-pyrazol-1-yl)pyridin-3-yl]piperidine-4-carboxamide | n/a | n/a | n/a | n/a |
| Explore | n/a | 05F | 4-[(1~{R},5~{S})-3,8-diazabicyclo[3.2.1]octan-8-yl]-7-(8-methylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine | n/a | n/a | n/a | n/a |
| Explore | n/a | 05G | 6-hydroxy-5-[(E)-(2-methoxy-5-methyl-4-sulfophenyl)diazenyl]naphthalene-2-sulfonic acid | Organic compounds | Benzenoids | Naphthalenes | Naphthalene sulfonic acids and derivatives |
| Explore | n/a | 05I | 4-[(1~{S},5~{R})-3,8-diazabicyclo[3.2.1]octan-3-yl]-7-(8-methylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine | n/a | n/a | n/a | n/a |
| Explore | DB18028 | 05J | 1-[(7R)-7-ethyl-7-hydroxy-6,7-dihydro-5H-cyclopenta[b]pyridin-2-yl]-6-[4-(4-methylpiperazin-1-yl)anilino]-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one | Organic compounds | Organoheterocyclic compounds | Diazinanes | Piperazines |
| Explore | n/a | 05L | heptyl 1-seleno-beta-D-glucopyranoside | Organic compounds | Organic oxygen compounds | Organooxygen compounds | Carbohydrates and carbohydrate conjugates |
| Explore | n/a | 05M | 2,3-dimethoxy-5-methyl-6-[10-(triphenyl-$l^{5}-phosphanyl)decyl]cyclohexa-2,5-diene-1,4-dione | Organic compounds | Lipids and lipid-like molecules | Prenol lipids | Quinone and hydroquinone lipids |
| Explore | n/a | 05Q | 6-benzyloxo-2-chloropurine | Organic compounds | Organoheterocyclic compounds | Imidazopyrimidines | Purines and purine derivatives |