DrugDomain logoDrugDomain

Attributes

UniProt ID
O53223
Protein Name
L,D-transpeptidase 2
Ligand Name
GLYCEROL
DrugBank ID
DB09462
PDB Ligand Accession
GOL
ChEMBL ID
n/a
PubChem ID
n/a
InChIKey
PEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
C(C(CO)O)O
Drug Action
No data available
Affinity Metrics
No affinity data available

3D Structure

Interactive Mol* view for the current protein-molecule pair.

Mol*
Structure: 3VYP
Open File
Hover over the Mol* viewer to rotate or zoom with the mouse. Move the cursor out of the viewer to go back to normal page scrolling and one-click navigation.
Hover inside the viewer to rotate or zoom. Move out to scroll the page or click links normally.
Color Legend
Unassigned regionsLigand / hetero atomse3vypA1e3vypA2e3vypB1e3vypB2
ECOD domains from experimental PDB structures interacting with ligand DB09462
UniProtDrugBankPDB LigandPDB IDECOD DomainRange Definition
O53223DB09462GOL3vype3vypA1A:141-239
O53223DB09462GOL3vype3vypA2A:240-408
O53223DB09462GOL3vype3vypB1B:142-239
O53223DB09462GOL3vype3vypB2B:240-405
O53223DB09462GOL4gsqe4gsqA1A:251-408
O53223DB09462GOL4gsre4gsrA3A:146-250
O53223DB09462GOL4gsre4gsrA4A:251-408
O53223DB09462GOL5d7he5d7hA2A:58-250
O53223DB09462GOL5d7he5d7hB2B:251-407
O53223DB09462GOL5dc2e5dc2A2A:56-250
O53223DB09462GOL5dc2e5dc2B1B:56-250
O53223DB09462GOL5dcce5dccA2A:56-250
O53223DB09462GOL5dcce5dccB2B:56-250
O53223DB09462GOL6rrme6rrmA1A:57-250
O53223DB09462GOL6rrme6rrmA2A:251-407
O53223DB09462GOL8a1le8a1lA1A:54-250
O53223DB09462GOL8a1le8a1lA2A:251-407
O53223DB09462GOL8a1me8a1mA1A:55-250
O53223DB09462GOL8a1ne8a1nA1A:58-250
O53223DB09462GOL8a1ne8a1nA2A:251-407
O53223DB09462GOL8a1oe8a1oA1A:57-250
O53223DB09462GOL8bk3e8bk3A1A:251-407