DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER

P04050 — DNA-directed RNA polymerase II subunit RPB1

ECOD Domain Annotations

ECOD domains from AlphaFold model interacting with ligand DB02596

UniProt	DrugBank	PDB Ligand	Domain Label	ECOD ID	X Group	H Group	T Group	F Group
No predicted ECOD data found

ECOD domains from experimental PDB structures interacting with ligand DB02596

UniProt	DrugBank	PDB ID	Ligand Acc.	Chain	Res No.	Exp. Domain	X Group	H Group	T Group	F Group
P04050	DB02596	4a3e	APC	P	1011	e4a3eA2	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P04050	DB02596	4a3e	APC	P	1011	e4a3eA4	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5
P04050	DB02596	4a3e	APC	P	1011	e4a3eA6	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB02596	4a3f	APC	A	2455	e4a3fA2	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P04050	DB02596	4a3f	APC	A	2455	e4a3fA4	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5
P04050	DB02596	4a3f	APC	A	2455	e4a3fA6	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB02596	4a3l	APC	P	1011	e4a3lA2	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P04050	DB02596	4a3l	APC	P	1011	e4a3lA4	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5
P04050	DB02596	4a3l	APC	P	1011	e4a3lA6	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB02596	4a3m	APC	A	2455	e4a3mA2	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P04050	DB02596	4a3m	APC	A	2455	e4a3mA4	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5
P04050	DB02596	4a3m	APC	A	2455	e4a3mA6	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB02596	4by1	APC	P	12	e4by1A1	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5
P04050	DB02596	4by1	APC	P	12	e4by1A5	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB02596	6blp	APC	A	1805	e6blpA1	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB02596	6blp	APC	A	1805	e6blpA6	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P04050	DB02596	6upy	APC	B	1301	e6upyA2	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB02596	6upy	APC	B	1301	e6upyA7	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4