MAGNESIUM ION

P24928 — DNA-directed RNA polymerase II subunit RPB1

ECOD Domain Annotations

ECOD domains from AlphaFold model interacting with ligand MG

UniProt	DrugBank	PDB Ligand	Domain Label	ECOD ID	X Group	H Group	T Group	F Group
No predicted ECOD data found

ECOD domains from experimental PDB structures interacting with ligand MG

UniProt	DrugBank	PDB ID	Ligand Acc.	Chain	Res No.	Exp. Domain	X Group	H Group	T Group	F Group
P24928	n/a	5iy6	MG	A	2001	e5iy6A4	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iy6	MG	B	1201	e5iy6A4	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iy6	MG	B	1201	e5iy6A6	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P24928	n/a	5iy7	MG	A	2001	e5iy7A7	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iy7	MG	A	2001	e5iy7A8	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_1
P24928	n/a	5iy7	MG	B	1201	e5iy7A7	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iy7	MG	B	1201	e5iy7A8	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_1
P24928	n/a	5iy7	MG	B	1201	e5iy7A9	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_3
P24928	n/a	5iy8	MG	A	2002	e5iy8A7	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iy8	MG	A	2002	e5iy8A8	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_1
P24928	n/a	5iy9	MG	A	2002	e5iy9A2	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iya	MG	A	2001	e5iyaA7	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iya	MG	B	1201	e5iyaA3	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P24928	n/a	5iya	MG	B	1201	e5iyaA7	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iyb	MG	A	2001	e5iybA5	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iyb	MG	U	401	e5iybA1	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_1
P24928	n/a	5iyb	MG	U	401	e5iybA5	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iyc	MG	A	2002	e5iycA6	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_1
P24928	n/a	5iyc	MG	A	2002	e5iycA7	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	5iyd	MG	A	2002	e5iydA2	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	6xre	MG	A	2001	e6xreA7	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	7egb	MG	o	2003	e7egbo9	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	7egc	MG	o	2003	e7egco7	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	7lbm	MG	A	2004	e7lbmA4	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P24928	n/a	7ycx	MG	1	2101	e7ycx16	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2