SODIUM ION

Q38087 — DNA-directed DNA polymerase

ECOD Domain Annotations

ECOD domains from AlphaFold model interacting with ligand NA

UniProt	DrugBank	PDB Ligand	Domain Label	ECOD ID	X Group	H Group	T Group	F Group
No predicted ECOD data found

ECOD domains from experimental PDB structures interacting with ligand NA

UniProt	DrugBank	PDB ID	Ligand Acc.	Chain	Res No.	Exp. Domain	X Group	H Group	T Group	F Group
Q38087	n/a	3cq8	NA	A	1009	e3cq8A3	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like	DNA_pol_B
Q38087	n/a	4i9q	NA	A	1004	e4i9qA1	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like	DNA_pol_B
Q38087	n/a	4i9q	NA	B	1004	e4i9qB2	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like	DNA_pol_B
Q38087	n/a	4khn	NA	A	1010	e4khnA7	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like	DNA_pol_B
Q38087	n/a	4khq	NA	A	1012	e4khqA7	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like	DNA_pol_B
Q38087	n/a	4khs	NA	A	1009	e4khsA6	fingers domain in bacteriophage RB69-like DNA polymerase I	fingers domain in bacteriophage RB69-like DNA polymerase I	fingers domain in bacteriophage RB69-like DNA polymerase I	n/a
Q38087	n/a	4khs	NA	A	1009	e4khsA7	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like	DNA_pol_B
Q38087	n/a	4khu	NA	A	1008	e4khuA7	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like	DNA_pol_B
Q38087	n/a	4khw	NA	A	1011	e4khwA4	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like	DNA_pol_B_exo1
Q38087	n/a	4khy	NA	A	1013	e4khyA7	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like	DNA_pol_B
Q38087	n/a	4ki4	NA	A	1011	e4ki4A4	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like	DNA_pol_B_exo1
Q38087	n/a	4ki6	NA	A	1009	e4ki6A4	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like	DNA_pol_B_exo1