PDB Ligand Accession
Browse small molecules by PDB ligand accession and use Explore to open matching proteins.
37373 molecules found
| DrugDomain Data | DrugBank ID | PDB Ligand | Ligand Name | Kingdom | Superclass | Class | Subclass |
|---|---|---|---|---|---|---|---|
| Explore | n/a | 0GV | (3beta,8alpha,9beta)-3-hydroxycholest-5-en-7-one | Organic compounds | Lipids and lipid-like molecules | Steroids and steroid derivatives | Cholestane steroids |
| Explore | n/a | 0GW | 5-(1-ethoxyisoquinolin-3-yl)-2,4-dihydro-3H-1,2,4-triazol-3-one | n/a | n/a | n/a | n/a |
| Explore | n/a | 0GX | {(3-exo)-3-[5-(aminomethyl)-2-fluorophenyl]-8-azabicyclo[3.2.1]oct-8-yl}(4-bromo-3-methyl-5-propoxythiophen-2-yl)methanone | Organic compounds | Alkaloids and derivatives | Tropane alkaloids | Phenyltropanes |
| Explore | n/a | 0GY | (1E,3Z)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylic acid | Organic compounds | Organic acids and derivatives | Carboxylic acids and derivatives | Tricarboxylic acids and derivatives |
| Explore | n/a | 0GZ | 2-oxo-2H-pyran-4,6-dicarboxylic acid | Organic compounds | Organoheterocyclic compounds | Pyrans | Pyranones and derivatives |
| Explore | n/a | 0H0 | Carbohydrate component from a pentavalent N-acetylneuraminic acid conjugate | n/a | n/a | n/a | n/a |
| Explore | n/a | 0H1 | 5-ethyl-7-nitro-3-[3-oxidanylidene-3-(thiophen-2-ylsulfonylamino)propyl]-1H-indole-2-carboxylic acid | n/a | n/a | n/a | n/a |
| Explore | n/a | 0H2 | [1,3-dioxo-6-(pyridin-2-yl-kappaN)-2,3-dihydro-1H-isoindol-5-yl-kappaC~5~][(thioxomethylidene)azanido-kappaN](1,4,7-trithionane-kappa~3~S~1~,S~4~,S~7~)ruthenium | Organic compounds | Organoheterocyclic compounds | Isoindoles and derivatives | Isoindolines |
| Explore | n/a | 0H3 | 7-(6-methoxypyridin-3-yl)-4-{[2-(propan-2-yloxy)ethyl]amino}-1-(2-propoxyethyl)pyrido[4,3-d]pyrimidin-2(1H)-one | Organic compounds | Organoheterocyclic compounds | Pyridines and derivatives | Bipyridines and oligopyridines |
| Explore | n/a | 0H4 | (2S)-3-cyclopentyl-N-(5-methylpyridin-2-yl)-2-[2-oxo-4-(trifluoromethyl)pyridin-1(2H)-yl]propanamide | Organic compounds | Organic nitrogen compounds | Organonitrogen compounds | N-arylamides |
| Explore | n/a | 0H5 | 6-methoxy-N-(1-methyl-1H-pyrazol-3-yl)quinazolin-4-amine | Organic compounds | Organoheterocyclic compounds | Diazanaphthalenes | Benzodiazines |
| Explore | DB11765 | 0H6 | 6-({(2S)-3-cyclopentyl-2-[4-(trifluoromethyl)-1H-imidazol-1-yl]propanoyl}amino)pyridine-3-carboxylic acid | Organic compounds | Organoheterocyclic compounds | Pyridines and derivatives | Pyridinecarboxylic acids and derivatives |
| Explore | n/a | 0H7 | (3R)-1-azabicyclo[2.2.2]oct-3-yl[bis(5-chlorothiophen-2-yl)]methanol | Organic compounds | Organoheterocyclic compounds | Quinuclidines | n/a |
| Explore | n/a | 0H8 | N-(3-carboxypropanoyl)-L-valyl-N-[(1R)-5-amino-1-phosphonopentyl]-L-prolinamide | Organic compounds | Organic acids and derivatives | Carboxylic acids and derivatives | Amino acids, peptides, and analogues |
| Explore | n/a | 0H9 | 2-[(4-methoxybenzyl)amino]ethanesulfonic acid | Organic compounds | Benzenoids | Benzene and substituted derivatives | Phenylmethylamines |
| Explore | n/a | 0HD | 1-(1H-indazol-5-yl)-3-(2-phenylethyl)urea | Organic compounds | Organoheterocyclic compounds | Benzopyrazoles | Indazoles |
| Explore | n/a | 0HG | N-[(4S)-4-ammonio-4-carboxybutanoyl]-S-(4-bromobenzyl)-L-cysteinylglycine | Organic compounds | Organic acids and derivatives | Carboxylic acids and derivatives | Amino acids, peptides, and analogues |
| Explore | n/a | 0HH | L-gamma-glutamyl-S-nonyl-L-cysteinylglycine | Organic compounds | Organic acids and derivatives | Carboxylic acids and derivatives | Amino acids, peptides, and analogues |
| Explore | DB01409 | 0HK | (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane | Organic compounds | Organoheterocyclic compounds | Oxazinanes | Morpholines |
| Explore | n/a | 0HL | 4-{[(3R)-3-{[(7-methoxynaphthalen-2-yl)sulfonyl](thiophen-3-ylmethyl)amino}-2-oxopyrrolidin-1-yl]methyl}thiophene-2-carboximidamide | Organic compounds | Benzenoids | Naphthalenes | Naphthalene sulfonic acids and derivatives |
| Explore | n/a | 0HM | 2-{[4-(aminomethyl)phenyl]carbamoyl}-1-[(1-benzyl-1H-imidazol-2-yl)methyl]-3-hydroxypyridinium | Organic compounds | Benzenoids | Benzene and substituted derivatives | Anilides |
| Explore | n/a | 0HN | 1,3-benzodioxole-5-carboxylic acid | Organic compounds | Organoheterocyclic compounds | Benzodioxoles | n/a |
| Explore | n/a | 0HO | 2,1,3-benzothiadiazole-5-carboxylic acid | Organic compounds | Organoheterocyclic compounds | Benzothiadiazoles | n/a |
| Explore | n/a | 0HP | ~{N}-[(5-carbamimidoyl-3-phenyl-thiophen-2-yl)methyl]-2-(1~{H}-indol-6-yl)ethanamide | n/a | n/a | n/a | n/a |
| Explore | n/a | 0HT | methyl N-[(2S,3S)-3-amino-2-hydroxy-5-methylhexyl]-L-valyl-L-isoleucyl-L-phenylalaninate | Organic compounds | Organic acids and derivatives | Carboxylic acids and derivatives | Amino acids, peptides, and analogues |
| Explore | n/a | 0HV | 3-[(4-nitronaphthalen-1-yl)amino]benzoic acid | Organic compounds | Benzenoids | Naphthalenes | Nitronaphthalenes |
| Explore | n/a | 0HX | pentan-3-yl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid | Organic compounds | Organic acids and derivatives | Carboxylic acids and derivatives | Carboxylic acid derivatives |
| Explore | n/a | 0HY | methyl (3R)-3-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)butanoate | Organic compounds | Organoheterocyclic compounds | Diazines | Pyrimidines and pyrimidine derivatives |
| Explore | n/a | 0HZ | amino({3-[(3S,8aS)-1,4-dioxooctahydropyrrolo[1,2-a]pyrazin-3-yl]propyl}amino)methaniminium | Organic compounds | Organic acids and derivatives | Carboxylic acids and derivatives | Amino acids, peptides, and analogues |
| Explore | n/a | 0I0 | 2-[1,5-dimethyl-2,4-bis(oxidanylidene)-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazolin-3-yl]-N-(2-pyren-1-yloxyethyl)ethanamide | n/a | n/a | n/a | n/a |