URIDINE 5'-TRIPHOSPHATE

P04050 — DNA-directed RNA polymerase II subunit RPB1

ECOD Domain Annotations

ECOD domains from AlphaFold model interacting with ligand DB04005

UniProt	DrugBank	PDB Ligand	Domain Label	ECOD ID	X Group	H Group	T Group	F Group
No predicted ECOD data found

ECOD domains from experimental PDB structures interacting with ligand DB04005

UniProt	DrugBank	PDB ID	Ligand Acc.	Chain	Res No.	Exp. Domain	X Group	H Group	T Group	F Group
P04050	DB04005	1r9s	UTP	R	3000	e1r9sA10	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB04005	1r9s	UTP	R	3000	e1r9sA12	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P04050	DB04005	1twf	UTP	B	3571	e1twfA1	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB04005	1twf	UTP	B	3571	e1twfA10	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P04050	DB04005	2nvz	UTP	B	3000	e2nvzA11	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5
P04050	DB04005	2nvz	UTP	B	3000	e2nvzA13	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB04005	2nvz	UTP	B	3000	e2nvzA15	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
P04050	DB04005	2yu9	UTP	A	2003	e2yu9A5	cradle loop barrel	RIFT-related	double psi	RNA_pol_Rpb1_2
P04050	DB04005	2yu9	UTP	A	2003	e2yu9A7	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4